Publications

The following are publications made possible by iCER resources. MSU faculty that would like to highlight the output of their research that's benefited from iCER resources are invited to contact us.

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2023
G. Janson, Valdes-Garcia, G., Heo, L., and Feig, M., “Direct generation of protein conformational ensembles via machine learning”, vol. 14, no. 1, p. 774, 2023.
2022
R. Carmen And Ela, Raza, S., Heiden, P. A., Vermaas, J. V., and Ong, R. G., “Lignin Nanoparticle Morphology Depends on Polymer Properties and Solvent Composition: an Experimental and Computational Study”, ACS Applied Polymer Materials, vol. 4, no. 10, pp. 6925 - 6935, 2022.
J. V. Vermaas, Crowley, M. F., and Beckham, G. T., “Molecular simulation of lignin-related aromatic compound permeation through gram-negative bacterial outer membranes”, Journal of Biological Chemistry, vol. 298, no. 12, 2022.
M. Kulke and Vermaas, J. V., “Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations”, Journal of Chemical Theory and Computation, vol. 18, no. 10, pp. 6161 - 6171, 2022.
2021
R. Ringle, Bollen, G., Lund, K., Nicoloff, C., Schwarz, S., Sumithrarachchi, C. S., and Villari, A. C. C., “Particle-in-cell techniques for the study of space charge effects in the Advanced Cryogenic Gas Stopper”, Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, vol. 496, pp. 61-70, 2021.
2014
J. M. Allmond, Brown, B. A., Stuchbery, A. E., Galindo-Uribarri, A., Padilla-Rodal, E., Radford, D. C., Batchelder, J. C., Howard, M. E., Liang, J. F., Manning, B., Varner, R. L., and Yu, C. H., “High-precision B(E2) Measurements of Semi-Magic 58,60,62,64Ni by Coulomb Excitation”, PHYSICAL REVIEW C, vol. 90, 2014.
P. Papka, Sharpey-Schafer, J. F., Brown, B. A., Dinoko, T. S., Khaleel, E. A. M. A., Lawrie, E. A., Lawrie, J. J., Li, K. C. W., Majola, S. N. T., Richter, W. A., Shirinda, O., Stankiewicz, M. A., Vymers, P., and Wiedeking, M., “High-resolution two-proton stripping to 2p-1h 7/2− states via the 59Co(3He,nγ)61Cu reaction”, THE EUROPEAN PHYSICAL JOURNAL A, vol. 50, 2014.
2013
A. Zitrin, Meneghetti, M., Umetsu, K., Broadhurst, T., Bartelmann, M., Bouwens, R., Bradley, L., Carrasco, M., Coe, D., Ford, H., Kelson, D., Koekemoer, A. M., Medezinski, E., Moustakas, J., Moustakas, L. A., Nonino, M., Postman, M., Rosati, P., Seidel, G., Seitz, S., Sendra, I., Shu, X., Vega, J., and Zheng, W., “CLASH: The Enhanced Lensing Efficiency of the Highly Elongated Merging Cluster MACS J0416.1-2403”, The Astrophysical Journal Letters, vol. 762, no. 2, 2013.
A. Zitrin, Meneghetti, M., Umetsu, K., Broadhurst, T., Bartelmann, M., Bouwens, R., Bradley, L., Carrasco, M., Coe, D., Ford, H., Kelson, D., Koekemoer, A. M., Medezinski, E., Moustakas, J., Moustakas, L. A., Nonino, M., Postman, M., Rosati, P., Seidel, G., Seitz, S., Sendra, I., Shu, X., Vega, J., and Zheng, W., “CLASH: The Enhanced Lensing Efficiency of the Highly Elongated Merging Cluster MACS J0416.1-2403”, The Astrophysical Journal Letters, vol. 762, 2013.
D. Coe, Zitrin, A., Carrasco, M., Shu, X., Zheng, W., Postman, M., Bradley, L., Koekemoer, A., Bouwens, R., Broadhurst, T., Monna, A., Host, O., Moustakas, L. A., Ford, H., Moustakas, J., van der Wel, A., Donahue, M., Rodney, S. A., Ben{\'ıtez, N., Jouvel, S., Seitz, S., Kelson, D. D., and Rosati, P., “CLASH: Three Strongly Lensed Images of a Candidate z 11 Galaxy”, The Astrophysical Journal, vol. 762, 2013.
D. Coe, Zitrin, A., Carrasco, M., Shu, X., Zheng, W., Postman, M., Bradley, L., Koekemoer, A., Bouwens, R., Broadhurst, T., Monna, A., Host, O., Moustakas, L. A., Ford, H., Moustakas, J., van der Wel, A., Donahue, M., Rodney, S. A., Benítez, N., Jouvel, S., Seitz, S., Kelson, D. D., and Rosati, P., “CLASH: Three Strongly Lensed Images of a Candidate z~11 Galaxy”, The Astrophysical Journal, vol. 762, no. 1, 2013.
2012
A. Zitrin, Rosati, P., Nonino, M., Grillo, C., Postman, M., Coe, D., Seitz, S., Eichner, T., Broadhurst, T., Jouvel, S., Balestra, I., Mercurio, A., Scodeggio, M., Benítez, N., Bradley, L., Ford, H., Host, O., Jimenez-Teja, Y., Koekemoer, A., Zheng, W., Bartelmann, M., Bouwens, R., Czoske, O., Donahue, M., Graur, O., Graves, G., Infante, L., Jha, S., Kelson, D., Lahav, O., Lazkoz, R., Lemze, D., Lombardi, M., Maoz, D., McCully, C., Medezinski, E., Melchior, P., Meneghetti, M., Merten, J., Molino, A., Moustakas, L. A., Ogaz, S., Patel, B., Regoes, E., Riess, A., Rodney, S., Umetsu, K., and Van der Wel, A., “CLASH: New Multiple Images Constraining the Inner Mass Profile of MACS J1206.2-0847”, The Astrophysical Journal, vol. 749, no. 2, 2012.
C. R. Buell, Adhikari, B., Savory, E., Vaillancourt, B., Childs, K. L., Hamilton, J. P., and Day, B., “Expression profiling of Cucumis sativus in response to infection by Pseudoperonospora cubensis”, PLoS ONE, in press, 2012.
W. Zheng, Postman, M., Zitrin, A., Moustakas, J., Shu, X., Jouvel, S., Høst, O., Molino, A., Bradley, L., Coe, D., Moustakas, L. A., Carrasco, M., Ford, H., Benítez, N., Lauer, T. R., Seitz, S. ;B., Bouwens, R., Koekemoer, A., Medezinski, E., Bartelmann, M., Broadhurst, T., Donahue, M., Grillo, C., Infante, L., Jha, S. W., Kelson, D. D., Lahav, O., Lemze, D., Melchior, P., Meneghetti, M., Merten, J., Nonino, M., Ogaz, S., Rosati, P., Umetsu, K., and van der Wel, A., “A magnified young galaxy from about 500 million years after the Big Bang”, Nature, vol. 489, no. 7416, 2012.
E. Savory, Adhikari, B., Hamilton, J. P., Vaillancourt, B., Buell, C. R., and Day, B., “mRNA-Seq analysis of the Pseudoperonospora cubensis transcriptome during cucumber (Cucumis sativus L.) infection”, PLoS ONE, in press, 2012.
2011
F. A. Gómez, Minchev, I., Villalobos, Á., O'Shea, B. W., and Williams, M. E. K., “Signatures of minor mergers in Milky Way-like disc kinematics: Ringing revisited”, ArXiv e-prints, 2011.
2009
R. Walker, Moore, N., Arima, E., Perz, S., Simmons, C., Caldas, M., Vergara, D., and Bohrer, C., “Protecting the Amazon with Protected Areas”, PNAS, vol. 106, 2009.
A. Tomic, Rak, Z., Veazey, J., Malliakas, C., Mahanti, S. D., Kanatzidis, M., and Tessmer, S., “Scanning tunneling microscopy study of the CeTe3 charge density wave”, Physical Review B, vol. 79, no. 8, 2009.
2008
D. J. Whalen, van Veelen, B., O'Shea, B. W., and Norman, M. L., “The Destruction of Cosmological Minihalos by Primordial Supernovae”, \apj, vol. 682, pp. 49-67, 2008.
2007
P. Piecuch, Wloch, M., and Verandas, A. J. C., “Renormalized Coupled-Cluster Methods: Theoretical Foundations and Application to Potential Function of Water”, in Progress in Theoretical Chemistry and Physics, vol. 16, no. Part 1, 2007, pp. 63-121.
K. Starosta, Dewald, A., Dunomes, A., Adrich, P., Amthor, A. M., Baumann, T., Bazin, D., Bowen, M., Brown, B. A., Chester, A., Gade, A., Galaviz, D., Glasmacher, T., Ginter, T., Hausmann, M., Horoi, M., Jolie, J., Melon, B., Miller, D., Moeller, V., Norris, R. P., Pissulla, T., Portillo, M., Rother, W., Shimbara, Y., Stolz, A., Vaman, C., Voss, P., Weisshaar, D., and Zelevinsky, V., “Shape and Structure of N = Z 64Ge: Electromagnetic Transition Rates from the Application of the Recoil Distance Method to a Knockout Reaction”, PHYSICAL REVIEW LETTERS, vol. 99, 2007.
K. Starosta, Dewald, A., Dunomes, A., Adrich, P., Amthor, A. M., Baumann, T., Bazin, D., Bowen, M., Brown, B. A., Chester, A., Gade, A., Galaviz, D., Glasmacher, T., Ginter, T., Hausmann, M., Horoi, M., Jolie, J., Melon, B., Miller, D., Moeller, V., Norris, R. P., Pissulla, T., Portillo, M., Rother, W., Shimbara, Y., Stolz, A., Vaman, C., Voss, P., Weisshaar, D., and Zelevinsky, V., “Shape and Structure of N = Z 64Ge: Electromagnetic Transition Rates from the Application of the Recoil Distance Method to a Knockout Reaction”, PHYSICAL REVIEW LETTERS, vol. 99, 2007.
C. Vaman, Andreoiu, C., Bazin, D., Beccerril, A., Brown, B. A., Campbell, C. M., Chester, A., Cook, J. M., Dinca, D. C., Gade, A., Galaviz, D., Glasmacher, T., Hjorth-Jensen}, M. {, Horoi, M., Miller, D., Moeller, V., Mueller, W. F., Schiller, A., Starosta, K., Stolz, A., Terry, J. R., Volya, A., Zelevinsky, V., and Zwahlen, H., “Z = 0 Shell Gap near 100Sn from Intermediate-Energy Coulomb Excitations in Even-Mass 106-112Sn Isotopes”, PHYSICAL REVIEW LETTERS, vol. 99, 2007.
C. Vaman, Andreoiu, C., Bazin, D., Beccerril, A., Brown, B. A., Campbell, C. M., Chester, A., Cook, J. M., Dinca, D. C., Gade, A., Galaviz, D., Glasmacher, T., Hjorth-Jensen}, M. {, Horoi, M., Miller, D., Moeller, V., Mueller, W. F., Schiller, A., Starosta, K., Stolz, A., Terry, J. R., Volya, A., Zelevinsky, V., and Zwahlen, H., “Z = 0 Shell Gap near 100Sn from Intermediate-Energy Coulomb Excitations in Even-Mass 106-112Sn Isotopes”, PHYSICAL REVIEW LETTERS, vol. 99, 2007.
2006
A. J. C. Varandas and Piecuch, P., “Extrapolating Potential Energy Surfaces by Scaling Electron Correlation at a Single Geometry”, Chemical Physics Letters, vol. 430, no. 4-6, pp. 448-453, 2006.

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